gene s wrote: I didn't check the end play of the new reverser shaft because I didn't get into the guts of the reverser, or the diameter of the pilot bearing, probably a big mistake.
The end-play on that shaft if critical. Most of the newly rebuilt reversers I saw fail were due to too much bearing preload. The problem in this. When you are trying to determine how loose - or tight - bearings are on a one piece shaft - it's pretty easy to adjust by "feel." One example is a wheel bearing on a car, truck, or tractor. Tighten until you feel no play - and then back off until you just feel a little. That will put you a zero to couple of thousanths end-play which is fine.
The problem with the reverser is - is does NOT have a one-piece shaft. It not only uses two shafts and three internal bearing assemblies, it also relies on the pilot bearing in the flywheel to support the front input shaft. That pilot bearing is - in essence - a fourth shaft-support bearing for the reverser. So, no matter how tight you make those bearings, there will always be some play that you can "feel" when you try to wobble the input shaft with the reverser not bolted to the engine. That is why it is essential to get a dial indicator on that input shaft - pry it fore and aft - and verify there is some play - and absolutely NO bearing preload.
You said you installed a new input shaft. That means you also installed a new bearing race at the end, and a new bearing assembly on the front? And also, maybe, a new front cover gasket for the reverser? Any one of those items, as well as dimensions on the new shaft could change the clearance specs a bit.
If the reverser is still, in-place and bolted to the trans - there is no traditional way to adjust the bearings. You can still check end-play though and make sure it's OK. If you had to adjust - the reverser has to come out. Adjustments are by shim-pack at the rear bearing quill where the output shaft comes out. To check end-play, the John Deere way -you pull the pipe plug from that rear bearing quill and install a dial indicator there. In your case, you can mount a dial indicator against the front shaft - and then find a way to pry it forwards - and backwards. If you get anything from .001" to .006" movement, you'll be fine.
If you wind up pulling that front cover off for any reason, you might want to take a close look at the oil lube orifice in the output shaft. It sometimes gets plugged. Worse yet, it sometimes gets left out when replacing the output shaft. It faces front and goes against the input shaft. A new output shaft does not come with that little jet installed - and can be a mess if left out. It keeps lube pressure up and helps the clutch packs release.